Plot options

 

INFO

Use multiple genes

Use list of genes Use mean expression of selected genes
Use ratio of two genes Filter by median expression
more genes param

Example

Example input for multiple genes:
1007_s_at 1
200000_s_at -1
31637_s_at 0.5
40016_g_at -2

Explanation:
first: normal,
second: gene is inverted,
third: gene has weight,
fourth: gene has weight and is inverted

You can also use following format:
1007_s_at, 1
200000_s_at, -1
31637_s_at, 0.5
40016_g_at, -2

Split patients by
Auto select best cutoff INFO
Trichotomization :  INFO
INFO INFO
INFO INFO

Probe set options

Use
user selected probe set
all probe sets per gene INFO
only JetSet best probe set INFO
Plot beeswarm graph of probe distribution: INFO

Restrict analysis to subtypes...

Stage:
Location:
Site:
Stage T:
Stage N:
Stage M:
Grade:
MSI:
BRAF mutation:
KRAS mutation:
TP53 mutation:

Restrict analysis to selected cohorts...

Gender:
CMS:
Adjuvant chemotherapy:

Use following dataset(s) for the analysis...

Dataset:

Please note: the generated p value does not include correction for multiple hypothesis testing by default.

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Please kindly cite our latest paper to support further development: Kovacs SA, Fekete JT, Gyorffy B: Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors, Acta Pharmacol Sin. 2023, doi: 10.1038/s41401-023-01079-6.

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