Plot options

 

INFO

Use multiple genes

Use list of genes Use mean expression of selected genes
Use ratio of two genes Filter by median expression
more genes param

Example

Example input for multiple genes:
1007_s_at 1
200000_s_at -1
31637_s_at 0.5
40016_g_at -2

Explanation:
first: normal,
second: gene is inverted,
third: gene has weight,
fourth: gene has weight and is inverted

You can also use following format:
1007_s_at, 1
200000_s_at, -1
31637_s_at, 0.5
40016_g_at, -2

Split patients by
Auto select best cutoff INFO
Trichotomization INFO
 INFO
INFO INFO

Probe set options

Use
user selected probe set
all probe sets per gene INFO
only JetSet best probe set INFO
Plot beeswarm graph of probe distribution: INFO

Restrict analysis to subtypes...

Karyotype:
FAB M:
Gender:
Sample source:
Treatment:

Use following dataset(s) for the analysis...

Dataset:

Restrict analysis to selected cohorts...

IDH1 mutation:
IDH2 mutation:
NPM1 mutation:
CEBPA mutation:
FLT3 internal tandem duplication mutation:
FLT3 tyrosine kinase domain mutation:
NRAS mutation:
KRAS mutation:
EVI1 expression:

Please note: the generated p value does not include correction for multiple hypothesis testing by default.

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Please kindly cite our latest paper to support further development: Gyorffy B: Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer, Geroscience, 2023, doi: 10.1007/s11357-023-00742-4.

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